This appears to be the last time points or suspended points were imposed by the FA:
1996/97 Brighton Division 3
2 points deducted for pitch invasions
When Brighton fans, protesting at the proposed move from their Goldstone ground home, invaded the pitch for the match against York City on Saturday April 27th 1996 they forced the abandonment of the match.
The club suffered a suspended three point penalty.
In 1996/97 Brighton fans again protested with a pitch invasion in the match against Lincoln City on Tuesday 1st October 1996 and were punished with losing two of the three points from that suspended sentence.